Package: detrendr 0.6.16
detrendr: Detrend Images
Detrend fluorescence microscopy image series for fluorescence fluctuation and correlation spectroscopy ('FCS' and 'FFS') analysis. This package contains functionality published in a 2016 paper <doi:10.1093/bioinformatics/btx434> but it has been extended since then with the Robin Hood algorithm and thus contains unpublished work.
Authors:
detrendr_0.6.16.tar.gz
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detrendr.pdf |detrendr.html✨
detrendr/json (API)
NEWS
| # Install 'detrendr' in R: |
| install.packages('detrendr', repos = c('https://rorynolan.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/rorynolan/detrendr/issues
Last updated 3 months agofrom:c70e9de445. Checks:OK: 3 NOTE: 6. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Nov 08 2024 |
| R-4.5-win-x86_64 | OK | Nov 08 2024 |
| R-4.5-linux-x86_64 | OK | Nov 08 2024 |
| R-4.4-win-x86_64 | NOTE | Nov 08 2024 |
| R-4.4-mac-x86_64 | NOTE | Nov 08 2024 |
| R-4.4-mac-aarch64 | NOTE | Nov 08 2024 |
| R-4.3-win-x86_64 | NOTE | Nov 08 2024 |
| R-4.3-mac-x86_64 | NOTE | Nov 08 2024 |
| R-4.3-mac-aarch64 | NOTE | Nov 08 2024 |
Exports:apply_on_pillarsbest_degreebest_lbest_swapsbest_taubrightness_pillarsdetrended_imgdir_detrend_boxcardir_detrend_expdir_detrend_polynomdir_detrend_rhdir_detrend_robinhoodimg_detrend_boxcarimg_detrend_expimg_detrend_polynomimg_detrend_rhimg_detrend_robinhoodmean_framesmean_pillarsmedian_pillarsrfromboxesrtoboxessum_framessum_pillarsvar_pillars
Dependencies:arrayhelpersautothresholdrbackportsbitbit64checkmateclicliprcodetoolscpp11crayondoParalleldplyrfansifilesstringsforeachfsgenericsgluehmsijtiffiteratorslifecyclemagrittrpillarpkgconfigplyrprettyunitsprogresspurrrR6RcppRcppParallelreadrrlangstrexstringistringrsvUnittibbletidyselecttzdbutf8vctrsvroomwithrzeallot
Batch mode
Rendered frombatch-mode.Rmdusingknitr::rmarkdownon Nov 08 2024.Last update: 2018-10-30
Started: 2018-10-29
Detrending single images
Rendered fromsingle-images.Rmdusingknitr::rmarkdownon Nov 08 2024.Last update: 2023-03-04
Started: 2018-10-29
Linescan data
Rendered fromlinescan-data.Rmdusingknitr::rmarkdownon Nov 08 2024.Last update: 2019-06-21
Started: 2019-06-21
