Package: detrendr 0.6.17

detrendr: Detrend Images

Detrend fluorescence microscopy image series for fluorescence fluctuation and correlation spectroscopy ('FCS' and 'FFS') analysis. This package contains functionality published in a 2016 paper <doi:10.1093/bioinformatics/btx434> but it has been extended since then with the Robin Hood algorithm and thus contains unpublished work.

Authors:Rory Nolan [aut, cre], Luis Alvarez [ctb, cph], Sergi Padilla-Parra [ctb, ths, cph]

detrendr_0.6.17.tar.gz
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detrendr_0.6.17.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
detrendr/json (API)

# Install 'detrendr' in R:
install.packages('detrendr', repos = c('https://rorynolan.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/rorynolan/detrendr/issues

Pkgdown/docs site:https://rorynolan.github.io

Uses libs:
  • c++– GNU Standard C++ Library v3

On CRAN:

Conda:

cpp

5.58 score 3 stars 1 packages 28 scripts 932 downloads 25 exports 48 dependencies

Last updated from:007e27b588. Checks:12 OK, 1 ERROR. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-arm64OK241
linux-devel-x86_64OK202
source / vignettesOK308
linux-release-arm64OK222
linux-release-x86_64OK220
macos-release-arm64OK152
macos-release-x86_64OK337
macos-oldrel-arm64OK175
macos-oldrel-x86_64OK215
windows-develERROR165
windows-releaseOK198
windows-oldrelOK166
wasm-releaseOK207

Exports:apply_on_pillarsbest_degreebest_lbest_swapsbest_taubrightness_pillarsdetrended_imgdir_detrend_boxcardir_detrend_expdir_detrend_polynomdir_detrend_rhdir_detrend_robinhoodimg_detrend_boxcarimg_detrend_expimg_detrend_polynomimg_detrend_rhimg_detrend_robinhoodmean_framesmean_pillarsmedian_pillarsrfromboxesrtoboxessum_framessum_pillarsvar_pillars

Dependencies:arrayhelpersautothresholdrbackportsbitbit64checkmateclicliprcodetoolscpp11crayondoParalleldplyrfilesstringsforeachfsgenericsgluehmsijtiffiteratorsjsonlitelifecyclelubridatemagrittrpillarpkgconfigplyrprettyunitsprogresspurrrR6RcppRcppParallelreadrrlangstrexstringistringrsvUnittibbletidyselecttimechangetzdbutf8vctrsvroomwithr

Detrending single images
An image in need of detrending | Thresholding | Detrending
Rendered fromsingle-images.Rmdusingknitr::rmarkdown

Last update: 2025-01-27
Started: 2018-10-29

Linescan data
Rendered fromlinescan-data.Rmdusingknitr::rmarkdown

Last update: 2019-06-21
Started: 2019-06-21

Batch mode
Batch detrending
Rendered frombatch-mode.Rmdusingknitr::rmarkdown

Last update: 2018-10-30
Started: 2018-10-29