Package: detrendr 0.6.17

detrendr: Detrend Images

Detrend fluorescence microscopy image series for fluorescence fluctuation and correlation spectroscopy ('FCS' and 'FFS') analysis. This package contains functionality published in a 2016 paper <doi:10.1093/bioinformatics/btx434> but it has been extended since then with the Robin Hood algorithm and thus contains unpublished work.

Authors:Rory Nolan [aut, cre], Luis Alvarez [ctb, cph], Sergi Padilla-Parra [ctb, ths, cph]

detrendr_0.6.17.tar.gz
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detrendr_0.6.17.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
detrendr/json (API)
NEWS

# Install 'detrendr' in R:
install.packages('detrendr', repos = c('https://rorynolan.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/rorynolan/detrendr/issues

Pkgdown/docs site:https://rorynolan.github.io

Uses libs:
  • c++– GNU Standard C++ Library v3

On CRAN:

Conda:

cpp

5.55 score 3 stars 1 packages 26 scripts 815 downloads 25 exports 48 dependencies

Last updated from:007e27b588. Checks:13 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-arm64OK202
linux-devel-x86_64OK213
source / vignettesOK328
linux-release-arm64OK229
linux-release-x86_64OK213
macos-release-arm64OK259
macos-release-x86_64OK294
macos-oldrel-arm64OK247
macos-oldrel-x86_64OK336
windows-develOK214
windows-releaseOK182
windows-oldrelOK170
wasm-releaseOK156

Exports:apply_on_pillarsbest_degreebest_lbest_swapsbest_taubrightness_pillarsdetrended_imgdir_detrend_boxcardir_detrend_expdir_detrend_polynomdir_detrend_rhdir_detrend_robinhoodimg_detrend_boxcarimg_detrend_expimg_detrend_polynomimg_detrend_rhimg_detrend_robinhoodmean_framesmean_pillarsmedian_pillarsrfromboxesrtoboxessum_framessum_pillarsvar_pillars

Dependencies:arrayhelpersautothresholdrbackportsbitbit64checkmateclicliprcodetoolscpp11crayondoParalleldplyrfilesstringsforeachfsgenericsgluehmsijtiffiteratorsjsonlitelifecyclelubridatemagrittrpillarpkgconfigplyrprettyunitsprogresspurrrR6RcppRcppParallelreadrrlangstrexstringistringrsvUnittibbletidyselecttimechangetzdbutf8vctrsvroomwithr

Batch mode

Rendered frombatch-mode.Rmdusingknitr::rmarkdownon May 19 2026.

Last update: 2018-10-30
Started: 2018-10-29

Detrending single images

Rory Nolan

Rendered fromsingle-images.Rmdusingknitr::rmarkdownon May 19 2026.

Last update: 2025-01-27
Started: 2018-10-29

Linescan data

Rendered fromlinescan-data.Rmdusingknitr::rmarkdownon May 19 2026.

Last update: 2019-06-21
Started: 2019-06-21