Type: Package
Package: detrendr
Title: Detrend Images
Version: 0.6.17
Authors@R: c(
    person("Rory", "Nolan", , "rorynoolan@gmail.com", role = c("aut", "cre"),
           comment = c(ORCID = "0000-0002-5239-4043")),
    person("Luis", "Alvarez", , "lalvarez@well.ox.ac.uk", role = c("ctb", "cph"),
           comment = c(ORCID = "0000-0003-1316-1906")),
    person("Sergi", "Padilla-Parra", , "spadilla@well.ox.ac.uk", role = c("ctb", "ths", "cph"),
           comment = c(ORCID = "0000-0002-8010-9481"))
  )
Maintainer: Rory Nolan <rorynoolan@gmail.com>
Description: Detrend fluorescence microscopy image series for
        fluorescence fluctuation and correlation spectroscopy ('FCS'
        and 'FFS') analysis. This package contains functionality
        published in a 2016 paper <doi:10.1093/bioinformatics/btx434>
        but it has been extended since then with the Robin Hood
        algorithm and thus contains unpublished work.
License: BSD_3_clause + file LICENSE
URL: https://rorynolan.github.io/detrendr/,
        https://github.com/rorynolan/detrendr#readme
BugReports: https://github.com/rorynolan/detrendr/issues
Depends: R (>= 3.1)
Imports: arrayhelpers (>= 1.1.0), autothresholdr (>= 1.3.11), checkmate
        (>= 1.9.3), doParallel, dplyr, filesstrings (>= 3.2.4),
        foreach, ijtiff (>= 2.2), iterators, magrittr (>= 1.5),
        parallel, plyr, purrr, Rcpp (>= 1.0.10), RcppParallel (>=
        5.1.7), rlang (>= 0.3.3), stringr (>= 1.4), tools, withr (>=
        2.1)
Suggests: abind, covr, ggplot2, glue (>= 1.3.0), graphics, gridExtra,
        knitr, lattice, MASS, magick, matrixStats, mgcv, pacman,
        R.utils, rmarkdown, spelling, testthat (>= 3.0), tidyr
LinkingTo: Rcpp (>= 1.0.10), RcppParallel (>= 5.1.7)
VignetteBuilder: knitr
Config/testthat/edition: 3
Config/testthat/parallel: true
Encoding: UTF-8
Language: en-US
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.2
SystemRequirements: GNU make
Config/pak/sysreqs: cmake libfftw3-dev make libbz2-dev libicu-dev
        libjpeg-dev liblzma-dev libtiff-dev libuv1-dev libwebp-dev
        libzstd-dev libx11-dev zlib1g-dev
Repository: https://rorynolan.r-universe.dev
Date/Publication: 2025-01-27 20:04:23 UTC
RemoteUrl: https://github.com/rorynolan/detrendr
RemoteRef: HEAD
RemoteSha: 007e27b58857d10807b4566dc0629bc64126a152
NeedsCompilation: yes
Packaged: 2026-06-24 08:38:03 UTC; root
Author: Rory Nolan [aut, cre] (ORCID: <https://orcid.org/0000-0002-5239-4043>),
  Luis Alvarez [ctb, cph] (ORCID:
    <https://orcid.org/0000-0003-1316-1906>),
  Sergi Padilla-Parra [ctb, ths, cph] (ORCID:
    <https://orcid.org/0000-0002-8010-9481>)