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Finding Thresholds9 months ago
Mostly high, some low | Trying all methods | Using one method | Using a frequency table
The ImageJ Problem1 years ago
Introduction | Frames and Channels in TIFF files | The Peculiarity of ImageJ TIFF files | Reading ImageJ TIFF files | The original tiff package | The ijtiff package | Note | Advice for all ImageJ users
Working with TIFF Tags1 years ago
Introduction to TIFF Tags | Supported TIFF Tags | Reading Tags from TIFF Files | Understanding Tag Values | Tags in Multi-Frame TIFF Files | Conclusion
Reading and Writing Images1 years ago
Reading TIFF files | Reading only certain frames | More examples | Writing TIFF files | Reading text images | Writing text images
Calculating brightness with single images1 years ago
Ordinary brightness | The need for detrending | Thresholding | Calculation including thresholding and detrending | Timeseries calculation | Saving Images | Studying the Distribution of Brightnesses
Detrending single images1 years ago
An image in need of detrending | Thresholding | Detrending
Alphordering Numbers2 years ago
Numbers don't comply with alphabetical order | Alphordering numbers
Before and After2 years ago
Before | After | A more concrete example
Important Miscellany2 years ago
The Importance of this miscellany | Could this be numeric? | Currency | Extract a single element of a string | Extract numbers and non-numeric elements | Split a string by its numbers | Force a file name to have an extension | Strip away a file extension | Remove quoted bits from a string | Split camel case | Convert a string to a vector | Trim anything, not just whitespace | Remove duplicated bits of strings
Numbers Within Strings2 years ago
A common way to encode numerical data | All of the numbers | Extract specific numbers | The n^th^ number | Numbers after patterns | Numbers before patterns | Tidy number extraction | Other number formats | All of the number functions | Regular expression
And/Or Detection4 years ago
How it works | Examples | Performance
Thresholding Images5 years ago
One function at a time6 years ago
Setup | Main event | Roxytest functionality | RStudio addin for roxytest functionality | Cleanup
A whole package6 years ago
Setup | Main event | Cleanup
One .R file at a time6 years ago
Setup | Main event | Cleanup
Linescan data7 years ago
Argument Matching7 years ago
Ignoring case | base | strex | Error Messages | No matches | Multiple matches | Wrong arg length | Duplicate elements in choices | Not specifying choices
Batch mode8 years ago
Batch detrending
Batch mode8 years ago
Batch processing
Brightness timeseries8 years ago
Ordinary brightness | A contiguous brightness timeseries | An overlapped brightness timeseries
Thresholding Image Stacks8 years ago
Stacks of Images
Text Images8 years ago
What are text images | What are they good for? | You might need to read them | You might (once in a million years) want to write them
Files8 years ago
Remove spaces from file names | Messed up file numbering | The name of a file without the extension | Ensure that a file name has a given extension