Package: autothresholdr 1.4.3

autothresholdr: An R Port of the 'ImageJ' Plugin 'Auto Threshold'

Algorithms for automatically finding appropriate thresholds for numerical data, with special functions for thresholding images. Provides the 'ImageJ' 'Auto Threshold' plugin functionality to R users. See <https://imagej.net/plugins/auto-threshold> and Landini et al. (2017) <doi:10.1111/jmi.12474>.

Authors:Rory Nolan [aut, cre, trl], Luis Alvarez [ctb], Sergi Padilla-Parra [ctb, ths], Gabriel Landini [ctb, cph]

autothresholdr_1.4.3.tar.gz
autothresholdr_1.4.3.zip(r-4.7)autothresholdr_1.4.3.zip(r-4.6)autothresholdr_1.4.3.zip(r-4.5)
autothresholdr_1.4.3.tgz(r-4.6-x86_64)autothresholdr_1.4.3.tgz(r-4.6-arm64)autothresholdr_1.4.3.tgz(r-4.5-x86_64)autothresholdr_1.4.3.tgz(r-4.5-arm64)
autothresholdr_1.4.3.tar.gz(r-4.7-arm64)autothresholdr_1.4.3.tar.gz(r-4.7-x86_64)autothresholdr_1.4.3.tar.gz(r-4.6-arm64)autothresholdr_1.4.3.tar.gz(r-4.6-x86_64)
autothresholdr_1.4.3.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
autothresholdr/json (API)

# Install 'autothresholdr' in R:
install.packages('autothresholdr', repos = c('https://rorynolan.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/rorynolan/autothresholdr/issues

Pkgdown/docs site:https://rorynolan.github.io

Uses libs:
  • c++– GNU Standard C++ Library v3

On CRAN:

Conda:

cpp

7.01 score 6 stars 5 packages 60 scripts 1.3k downloads 1 mentions 11 exports 38 dependencies

Last updated from:a720207320. Checks:13 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-arm64OK149
linux-devel-x86_64OK150
source / vignettesOK250
linux-release-arm64OK154
linux-release-x86_64OK149
macos-release-arm64OK95
macos-release-x86_64OK172
macos-oldrel-arm64OK96
macos-oldrel-x86_64OK189
windows-develOK124
windows-releaseOK96
windows-oldrelOK150
wasm-releaseOK156

Exports:apply_maskauto_threshauto_thresh_apply_maskauto_thresh_maskmaskmasked_arrmean_stack_threshmed_stack_threshstack_threshed_imgththreshed_arr

Dependencies:backportsbitbit64checkmateclicliprcpp11crayondplyrfsgenericsgluehmsijtiffjsonlitelifecyclelubridatemagrittrpillarpkgconfigprettyunitsprogresspurrrR6Rcppreadrrlangstrexstringistringrtibbletidyselecttimechangetzdbutf8vctrsvroomwithr

Finding Thresholds
Mostly high, some low | Trying all methods | Using one method | Using a frequency table
Rendered fromfinding-thresholds.Rmdusingknitr::rmarkdown

Last update: 2025-09-24
Started: 2018-09-07

Thresholding Images
Rendered fromthresholding-images.Rmdusingknitr::rmarkdown

Last update: 2021-11-18
Started: 2018-09-07

Thresholding Image Stacks
Stacks of Images
Rendered fromthresholding-image-stacks.Rmdusingknitr::rmarkdown

Last update: 2018-09-07
Started: 2018-09-07