Type: Package
Package: nandb
Title: Number and Brightness Image Analysis
Version: 2.1.1
Authors@R: 
    c(person(given = "Rory",
             family = "Nolan",
             role = c("aut", "cre", "cph"),
             email = "rorynoolan@gmail.com",
             comment = c(ORCID = "0000-0002-5239-4043")),
      person(given = "Luis",
             family = "Alvarez",
             role = c("ctb", "cph"),
             email = "lalvarez@well.ox.ac.uk",
             comment = c(ORCID = "0000-0003-1316-1906")),
      person(given = "Sergi",
             family = "Padilla-Parra",
             role = c("ctb", "ths", "cph"),
             email = "spadilla@well.ox.ac.uk",
             comment = c(ORCID = "0000-0002-8010-9481")))
Maintainer: Rory Nolan <rorynoolan@gmail.com>
Description: Calculation of molecular number and brightness from
        fluorescence microscopy image series. The software was
        published in a 2016 paper <doi:10.1093/bioinformatics/btx434>.
        The seminal paper for the technique is Digman et al. 2008
        <doi:10.1529/biophysj.107.114645>. A review of the technique
        was published in 2017 <doi:10.1016/j.ymeth.2017.12.001>.
License: BSD_3_clause + file LICENSE
URL: https://rorynolan.github.io/nandb/,
        https://github.com/rorynolan/nandb
BugReports: https://github.com/rorynolan/nandb/issues
Depends: R (>= 3.1)
Imports: assertthat, autothresholdr (>= 1.3.11), BBmisc, checkmate (>=
        1.9.3), detrendr (>= 0.6.12), dplyr, filesstrings (>= 3.2),
        ggplot2, glue (>= 1.3), ijtiff (>= 2.2), magrittr (>= 1.5),
        purrr, Rcpp (>= 1.0.1), reshape2, rlang (>= 0.3.3), stringr (>=
        1.4), utils, viridis, withr (>= 2.1.0)
Suggests: abind, covr, gridExtra, knitr, magick, matrixStats (>= 0.50),
        pacman, rmarkdown, spelling, testthat (>= 2.1), tidyr
LinkingTo: Rcpp (>= 1.0.1)
VignetteBuilder: knitr
Config/testthat/edition: 3
Config/testthat/parallel: true
Encoding: UTF-8
Language: en-US
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.1.1
Config/pak/sysreqs: cmake libfftw3-dev make libbz2-dev libicu-dev
        libjpeg-dev liblzma-dev libtiff-dev libuv1-dev libwebp-dev
        libzstd-dev libx11-dev zlib1g-dev
Repository: https://rorynolan.r-universe.dev
Date/Publication: 2025-01-27 20:32:50 UTC
RemoteUrl: https://github.com/rorynolan/nandb
RemoteRef: HEAD
RemoteSha: 7f1c7dea0f9904b68498c506231dc7dd7d61c919
NeedsCompilation: yes
Packaged: 2026-06-23 06:16:54 UTC; root
Author: Rory Nolan [aut, cre, cph] (ORCID:
    <https://orcid.org/0000-0002-5239-4043>),
  Luis Alvarez [ctb, cph] (ORCID:
    <https://orcid.org/0000-0003-1316-1906>),
  Sergi Padilla-Parra [ctb, ths, cph] (ORCID:
    <https://orcid.org/0000-0002-8010-9481>)